plot2ann.pl

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Name

plot2ann.pl - create probability annotations from a .plot file

Synopsis

plot2ann.pl FILE.plot FILE.ct

Description

plot2ann.pl writes probability annotations for the structure in FILE.ct using the probabilities in FILE.plot. Both bases of each base pair are annotated with the probability of that pair; each single-stranded base is annotated with the probability that it is single-stranded.

When stored in FILE.ann, the output can be used for structure annotation in sir_graph.


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