h-num.pl

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Name

h-num.pl - compute h-num from a .plot file

Synopsis

h-num.pl prefix

Description

h-num.pl computes the h-num of each helix in an energy dot plot prefix.plot and writes it to prefix.h-num.

hybrid-ss-min and hybrid-min calculate p-num values for each base; the p-num value is the number of pairing partners the base can have. The h-num for a particular base pair is defined as the sum of the p-num values for each base minus one, and the h-num for a helix is the average of the h-num values of each base pair in the helix.


Table of Contents