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ct-prob - calculate probabilities based on a .ct file.


ct-prob FILE.ct [FILE.plot]


ct-prob reads a set of stuctures in .ct format from FILE.ct and computes the probability of each base pair. These probabilities are written to standard output, in the same format as the .plot files written by hybrid, hybrid-ss, etc.

If FILE.plot is given, it is taken to contain the expected probabilities for each base pair. The output is then extended to include for each base pair the expected probability, the standard deviation and the relative error.

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