summary table of free energies

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Geewel
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Joined: 05/25/2012

how do i get the summary table of free energies of the different structure predictions of one sequence

zukerm
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Joined: 11/12/2010
summary tables of free energies

You have not specified what program or programs your are using. If you are running mfold, then files that end with ".det" contain free energy details of all the loops and stacked pairs in all foldings. This output is also available on the web application. If you are using one of the programs in the UNAFold package, run the ct-energy program on a ct file and use the "--verbose" flag. This will give you the energy of each structure in the ct file as well as all the energy details. Be sure to specify the correct energy files to use.